# Medical Image Deidentification, Cleaning and Compression Using Pylogik

arXiv: https://arxiv.org/abs/2304.12322 · HTML: https://mlsanity.com/paper/2304.12322/

## Key facts

- Cited by 1 papers in the map (data through 14 Oct 2026).
- Builds on 5 of its 31 references that are in the map.
- First posted on arXiv 20 Apr 2023.

## Builds on (most cited first, 5 of 5)

- [An End-to-End Trainable Neural Network for Image-based Sequence Recognition and Its Application to Scene Text Recognition](https://mlsanity.com/paper/1507.05717/) (2015)
- [Character Region Awareness for Text Detection](https://mlsanity.com/paper/1904.01941/) (2019)
- [Real-time Scene Text Detection with Differentiable Binarization](https://mlsanity.com/paper/1911.08947/) (2019)
- [Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning](https://mlsanity.com/paper/2112.04489/) (2021)
- [Optic-Net: A Novel Convolutional Neural Network for Diagnosis of Retinal Diseases from Optical Tomography Images](https://mlsanity.com/paper/1910.05672/) (2019)

## Built on by (most cited first, 1 of 1)

- [Exploring AI-based System Design for Pixel-level Protected Health Information Detection in Medical Images](https://mlsanity.com/paper/2501.09552/) (2025)

## Abstract (arXiv)

Leveraging medical record information in the era of big data and machine learning comes with the caveat that data must be cleaned and de-identified. Facilitating data sharing and harmonization for multi-center collaborations are particularly difficult when protected health information (PHI) is contained or embedded in image meta-data. We propose a novel library in the Python framework, called PyLogik, to help alleviate this issue for ultrasound images, which are particularly challenging because of the frequent inclusion of PHI directly on the images. PyLogik processes the image volumes through a series of text detection/extraction, filtering, thresholding, morphological and contour comparisons. This methodology de-identifies the images, reduces file sizes, and prepares image volumes for applications in deep learning and data sharing. To evaluate its effectiveness in processing ultrasound data, a random sample of 50 cardiac ultrasounds (echocardiograms) were processed through PyLogik, and the outputs were compared with the manual segmentations by an expert user. The Dice coefficient of the two approaches achieved an average value of 0.976. Next, an investigation was conducted to ascertain the degree of information compression achieved using the algorithm. Resultant data was found to be on average ~72% smaller after processing by PyLogik. Our results suggest that PyLogik is a viable methodology for data cleaning and de-identification, determining ROI, and file compression which will facilitate efficient storage, use, and dissemination of ultrasound data. Variants of the pipeline have also been created for use with other medical imaging data types.