# Leveraging Foundation Models for Clinical Text Analysis

arXiv: https://arxiv.org/abs/2303.13314 · HTML: https://mlsanity.com/paper/2303.13314/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 8 of its 45 references that are in the map.
- First posted on arXiv 20 Mar 2023.

## Builds on (most cited first, 8 of 8)

- [BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding](https://mlsanity.com/paper/1810.04805/) (2018)
- [On the Opportunities and Risks of Foundation Models](https://mlsanity.com/paper/2108.07258/) (2021)
- [BioBERT: a pre-trained biomedical language representation model for biomedical text mining](https://mlsanity.com/paper/1901.08746/) (2019)
- [Publicly Available Clinical BERT Embeddings](https://mlsanity.com/paper/1904.03323/) (2019)
- [Pre-trained Models for Natural Language Processing: A Survey](https://mlsanity.com/paper/2003.08271/) (2020)
- [ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission](https://mlsanity.com/paper/1904.05342/) (2019)
- [Named Entity Recognition with Bidirectional LSTM-CNNs](https://mlsanity.com/paper/1511.08308/) (2015)
- [Clinical Named Entity Recognition using Contextualized Token Representations](https://mlsanity.com/paper/2106.12608/) (2021)

## Abstract (arXiv)

Infectious diseases are a significant public health concern globally, and extracting relevant information from scientific literature can facilitate the development of effective prevention and treatment strategies. However, the large amount of clinical data available presents a challenge for information extraction. To address this challenge, this study proposes a natural language processing (NLP) framework that uses a pre-trained transformer model fine-tuned on task-specific data to extract key information related to infectious diseases from free-text clinical data. The proposed framework includes three components: a data layer for preparing datasets from clinical texts, a foundation model layer for entity extraction, and an assessment layer for performance analysis. The results of the evaluation indicate that the proposed method outperforms standard methods, and leveraging prior knowledge through the pre-trained transformer model makes it useful for investigating other infectious diseases in the future.