# DRIMET: Deep Registration for 3D Incompressible Motion Estimation in Tagged-MRI with Application to the Tongue

arXiv: https://arxiv.org/abs/2301.07234 · HTML: https://mlsanity.com/paper/2301.07234/

## Key facts

- Cited by 2 papers in the map (data through 14 Oct 2026).
- Builds on 9 of its 54 references that are in the map.
- First posted on arXiv 18 Jan 2023.

## Builds on (most cited first, 9 of 9)

- [U-Net: Convolutional Networks for Biomedical Image Segmentation](https://mlsanity.com/paper/1505.04597/) (2015)
- [VoxelMorph: A Learning Framework for Deformable Medical Image Registration](https://mlsanity.com/paper/1809.05231/) (2018)
- [Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning](https://mlsanity.com/paper/2112.04489/) (2021)
- [Unsupervised Learning for Fast Probabilistic Diffeomorphic Registration](https://mlsanity.com/paper/1805.04605/) (2018)
- [Fast Symmetric Diffeomorphic Image Registration with Convolutional Neural Networks](https://mlsanity.com/paper/2003.09514/) (2020)
- [U-Net vs Transformer: Is U-Net Outdated in Medical Image Registration?](https://mlsanity.com/paper/2208.04939/) (2022)
- [Learning Pixel Trajectories with Multiscale Contrastive Random Walks](https://mlsanity.com/paper/2201.08379/) (2022)
- [DeepTag: An Unsupervised Deep Learning Method for Motion Tracking on Cardiac Tagging Magnetic Resonance Images](https://mlsanity.com/paper/2103.02772/) (2021)
- [Coordinate Translator for Learning Deformable Medical Image Registration](https://mlsanity.com/paper/2203.03626/) (2022)

## Built on by (most cited first, 2 of 2)

- [MomentaMorph: Unsupervised Spatial-Temporal Registration with Momenta, Shooting, and Correction](https://mlsanity.com/paper/2308.02949/) (2023)
- [Is Registering Raw Tagged-MR Enough for Strain Estimation in the Era of Deep Learning?](https://mlsanity.com/paper/2401.17571/) (2024)

## Abstract (arXiv)

Tagged magnetic resonance imaging~(MRI) has been used for decades to observe and quantify the detailed motion of deforming tissue. However, this technique faces several challenges such as tag fading, large motion, long computation times, and difficulties in obtaining diffeomorphic incompressible flow fields. To address these issues, this paper presents a novel unsupervised phase-based 3D motion estimation technique for tagged MRI. We introduce two key innovations. First, we apply a sinusoidal transformation to the harmonic phase input, which enables end-to-end training and avoids the need for phase interpolation. Second, we propose a Jacobian determinant-based learning objective to encourage incompressible flow fields for deforming biological tissues. Our method efficiently estimates 3D motion fields that are accurate, dense, and approximately diffeomorphic and incompressible. The efficacy of the method is assessed using human tongue motion during speech, and includes both healthy controls and patients that have undergone glossectomy. We show that the method outperforms existing approaches, and also exhibits improvements in speed, robustness to tag fading, and large tongue motion. The code is available: https://github.com/jasonbian97/DRIMET-tagged-MRI