# Wide Range MRI Artifact Removal with Transformers

arXiv: https://arxiv.org/abs/2210.07976 · HTML: https://mlsanity.com/paper/2210.07976/

## Key facts

- Cited by 2 papers in the map (data through 14 Oct 2026).
- Builds on 26 of its 40 references that are in the map.
- First posted on arXiv 14 Oct 2022.

## Builds on (most cited first, 26 of 26)

- [Attention Is All You Need](https://mlsanity.com/paper/1706.03762/) (2017)
- [Deep Residual Learning for Image Recognition](https://mlsanity.com/paper/1512.03385/) (2015)
- [Adam: A Method for Stochastic Optimization](https://mlsanity.com/paper/1412.6980/) (2014)
- [An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale](https://mlsanity.com/paper/2010.11929/) (2020)
- [U-Net: Convolutional Networks for Biomedical Image Segmentation](https://mlsanity.com/paper/1505.04597/) (2015)
- [Swin Transformer: Hierarchical Vision Transformer using Shifted Windows](https://mlsanity.com/paper/2103.14030/) (2021)
- [Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shift](https://mlsanity.com/paper/1502.03167/) (2015)
- [Densely Connected Convolutional Networks](https://mlsanity.com/paper/1608.06993/) (2016)
- [Layer Normalization](https://mlsanity.com/paper/1607.06450/) (2016)
- [Generative Adversarial Networks](https://mlsanity.com/paper/2203.00667/) (2022)
- [Gaussian Error Linear Units (GELUs)](https://mlsanity.com/paper/1606.08415/) (2016)
- [V-Net: Fully Convolutional Neural Networks for Volumetric Medical Image Segmentation](https://mlsanity.com/paper/1606.04797/) (2016)
- [Photo-Realistic Single Image Super-Resolution Using a Generative Adversarial Network](https://mlsanity.com/paper/1609.04802/) (2016)
- [SwinIR: Image Restoration Using Swin Transformer](https://mlsanity.com/paper/2108.10257/) (2021)
- [Beyond a Gaussian Denoiser: Residual Learning of Deep CNN for Image Denoising](https://mlsanity.com/paper/1608.03981/) (2016)
- [Instance Normalization: The Missing Ingredient for Fast Stylization](https://mlsanity.com/paper/1607.08022/) (2016)
- [Unpaired Image-to-Image Translation using Cycle-Consistent Adversarial Networks](https://mlsanity.com/paper/1703.10593/) (2017)
- [DeblurGAN: Blind Motion Deblurring Using Conditional Adversarial Networks](https://mlsanity.com/paper/1711.07064/) (2017)
- [DeblurGAN-v2: Deblurring (Orders-of-Magnitude) Faster and Better](https://mlsanity.com/paper/1908.03826/) (2019)
- [Toward Multimodal Image-to-Image Translation](https://mlsanity.com/paper/1711.11586/) (2017)
- [TorchIO: A Python library for efficient loading, preprocessing, augmentation and patch-based sampling of medical images in deep learning](https://mlsanity.com/paper/2003.04696/) (2020)
- [Partial Volume Segmentation of Brain MRI Scans of any Resolution and Contrast](https://mlsanity.com/paper/2004.10221/) (2020)
- [Motion Corrected Multishot MRI Reconstruction Using Generative Networks with Sensitivity Encoding](https://mlsanity.com/paper/1902.07430/) (2019)
- [Learning MRI Artifact Removal With Unpaired Data](https://mlsanity.com/paper/2110.04604/) (2021)
- [Joint reconstruction and bias field correction for undersampled MR imaging](https://mlsanity.com/paper/2007.13123/) (2020)
- [Automatic artifact removal of resting-state fMRI with Deep Neural Networks](https://mlsanity.com/paper/2011.12113/) (2020)

## Built on by (most cited first, 2 of 2)

- [Deep Learning for Retrospective Motion Correction in MRI: A Comprehensive Review](https://mlsanity.com/paper/2305.06739/) (2023)
- [MAMOC: MRI Motion Correction via Masked Autoencoding](https://mlsanity.com/paper/2405.14590/) (2024)

## Abstract (arXiv)

Artifacts on magnetic resonance scans are a serious challenge for both radiologists and computer-aided diagnosis systems. Most commonly, artifacts are caused by motion of the patients, but can also arise from device-specific abnormalities such as noise patterns. Irrespective of the source, artifacts can not only render a scan useless, but can potentially induce misdiagnoses if left unnoticed. For instance, an artifact may masquerade as a tumor or other abnormality. Retrospective artifact correction (RAC) is concerned with removing artifacts after the scan has already been taken. In this work, we propose a method capable of retrospectively removing eight common artifacts found in native-resolution MR imagery. Knowledge of the presence or location of a specific artifact is not assumed and the system is, by design, capable of undoing interactions of multiple artifacts. Our method is realized through the design of a novel volumetric transformer-based neural network that generalizes a window-centered approach popularized by the Swin transformer. Unlike Swin, our method is (i) natively volumetric, (ii) geared towards dense prediction tasks instead of classification, and (iii), uses a novel and more global mechanism to enable information exchange between windows. Our experiments show that our reconstructions are considerably better than those attained by ResNet, V-Net, MobileNet-v2, DenseNet, CycleGAN and BicycleGAN. Moreover, we show that the reconstructed images from our model improves the accuracy of FSL BET, a standard skull-stripping method typically applied in diagnostic workflows.