# Automated GI tract segmentation using deep learning

arXiv: https://arxiv.org/abs/2206.11048 · HTML: https://mlsanity.com/paper/2206.11048/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 15 of its 29 references that are in the map.
- First posted on arXiv 22 Jun 2022.

## Builds on (most cited first, 15 of 15)

- [Deep Residual Learning for Image Recognition](https://mlsanity.com/paper/1512.03385/) (2015)
- [Adam: A Method for Stochastic Optimization](https://mlsanity.com/paper/1412.6980/) (2014)
- [U-Net: Convolutional Networks for Biomedical Image Segmentation](https://mlsanity.com/paper/1505.04597/) (2015)
- [EfficientNet: Rethinking Model Scaling for Convolutional Neural Networks](https://mlsanity.com/paper/1905.11946/) (2019)
- [SGDR: Stochastic Gradient Descent with Warm Restarts](https://mlsanity.com/paper/1608.03983/) (2016)
- [MobileNets: Efficient Convolutional Neural Networks for Mobile Vision Applications](https://mlsanity.com/paper/1704.04861/) (2017)
- [V-Net: Fully Convolutional Neural Networks for Volumetric Medical Image Segmentation](https://mlsanity.com/paper/1606.04797/) (2016)
- [UNet++: A Nested U-Net Architecture for Medical Image Segmentation](https://mlsanity.com/paper/1807.10165/) (2018)
- [Attention U-Net: Learning Where to Look for the Pancreas](https://mlsanity.com/paper/1804.03999/) (2018)
- [Tversky loss function for image segmentation using 3D fully convolutional deep networks](https://mlsanity.com/paper/1706.05721/) (2017)
- [ResUNet++: An Advanced Architecture for Medical Image Segmentation](https://mlsanity.com/paper/1911.07067/) (2019)
- [Brain Tumor Segmentation with Deep Neural Networks](https://mlsanity.com/paper/1505.03540/) (2015)
- [IoU Loss for 2D/3D Object Detection](https://mlsanity.com/paper/1908.03851/) (2019)
- [Normalization Techniques in Training DNNs: Methodology, Analysis and Application](https://mlsanity.com/paper/2009.12836/) (2020)
- [ColonFormer: An Efficient Transformer based Method for Colon Polyp Segmentation](https://mlsanity.com/paper/2205.08473/) (2022)

## Abstract (arXiv)

The job of Radiation oncologists is to deliver x-ray beams pointed toward the tumor and at the same time avoid the stomach and intestines. With MR-Linacs (magnetic resonance imaging and linear accelerator systems), oncologists can visualize the position of the tumor and allow for precise dose according to tumor cell presence which can vary from day to day. The current job of outlining the position of the stomach and intestines to adjust the X-ray beams direction for the dose delivery to the tumor while avoiding the organs. This is a time-consuming and labor-intensive process that can easily prolong treatments from 15 minutes to an hour a day unless deep learning methods can automate the segmentation process. This paper discusses an automated segmentation process using deep learning to make this process faster and allow more patients to get effective treatment.