# Nucleus Segmentation and Analysis in Breast Cancer with the MIScnn Framework

arXiv: https://arxiv.org/abs/2206.08182 · HTML: https://mlsanity.com/paper/2206.08182/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 6 of its 11 references that are in the map.
- First posted on arXiv 16 Jun 2022.

## Builds on (most cited first, 6 of 6)

- [U-Net: Convolutional Networks for Biomedical Image Segmentation](https://mlsanity.com/paper/1505.04597/) (2015)
- [Mask R-CNN](https://mlsanity.com/paper/1703.06870/) (2017)
- [Tversky loss function for image segmentation using 3D fully convolutional deep networks](https://mlsanity.com/paper/1706.05721/) (2017)
- [NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation](https://mlsanity.com/paper/2102.09099/) (2021)
- [MIScnn: A Framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning](https://mlsanity.com/paper/1910.09308/) (2019)
- [MISeval: a Metric Library for Medical Image Segmentation Evaluation](https://mlsanity.com/paper/2201.09395/) (2022)

## Abstract (arXiv)

The NuCLS dataset contains over 220.000 annotations of cell nuclei in breast cancers. We show how to use these data to create a multi-rater model with the MIScnn Framework to automate the analysis of cell nuclei. For the model creation, we use the widespread U-Net approach embedded in a pipeline. This pipeline provides besides the high performance convolution neural network, several preprocessor techniques and a extended data exploration. The final model is tested in the evaluation phase using a wide variety of metrics with a subsequent visualization. Finally, the results are compared and interpreted with the results of the NuCLS study. As an outlook, indications are given which are important for the future development of models in the context of cell nuclei.