# Clinical Dialogue Transcription Error Correction using Seq2Seq Models

arXiv: https://arxiv.org/abs/2205.13572 · HTML: https://mlsanity.com/paper/2205.13572/

## Key facts

- Cited by 1 papers in the map (data through 14 Oct 2026).
- Builds on 12 of its 26 references that are in the map.
- First posted on arXiv 26 May 2022.

## Builds on (most cited first, 12 of 12)

- [Attention Is All You Need](https://mlsanity.com/paper/1706.03762/) (2017)
- [BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding](https://mlsanity.com/paper/1810.04805/) (2018)
- [Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformer](https://mlsanity.com/paper/1910.10683/) (2019)
- [BART: Denoising Sequence-to-Sequence Pre-training for Natural Language Generation, Translation, and Comprehension](https://mlsanity.com/paper/1910.13461/) (2019)
- [Neural Machine Translation by Jointly Learning to Align and Translate](https://mlsanity.com/paper/1409.0473/) (2014)
- [Learning Phrase Representations using RNN Encoder-Decoder for Statistical Machine Translation](https://mlsanity.com/paper/1406.1078/) (2014)
- [BioBERT: a pre-trained biomedical language representation model for biomedical text mining](https://mlsanity.com/paper/1901.08746/) (2019)
- [PubMedQA: A Dataset for Biomedical Research Question Answering](https://mlsanity.com/paper/1909.06146/) (2019)
- [PAWS: Paraphrase Adversaries from Word Scrambling](https://mlsanity.com/paper/1904.01130/) (2019)
- [PubMed 200k RCT: a Dataset for Sequential Sentence Classification in Medical Abstracts](https://mlsanity.com/paper/1710.06071/) (2017)
- [ASR Error Correction and Domain Adaptation Using Machine Translation](https://mlsanity.com/paper/2003.07692/) (2020)
- [FastCorrect: Fast Error Correction with Edit Alignment for Automatic Speech Recognition](https://mlsanity.com/paper/2105.03842/) (2021)

## Built on by (most cited first, 1 of 1)

- [Silencing the Risk, Not the Whistle: A Semi-automated Text Sanitization Tool for Mitigating the Risk of Whistleblower Re-Identification](https://mlsanity.com/paper/2405.01097/) (2024)

## Abstract (arXiv)

Good communication is critical to good healthcare. Clinical dialogue is a conversation between health practitioners and their patients, with the explicit goal of obtaining and sharing medical information. This information contributes to medical decision-making regarding the patient and plays a crucial role in their healthcare journey. The reliance on note taking and manual scribing processes are extremely inefficient and leads to manual transcription errors when digitizing notes. Automatic Speech Recognition (ASR) plays a significant role in speech-to-text applications, and can be directly used as a text generator in conversational applications. However, recording clinical dialogue presents a number of general and domain-specific challenges. In this paper, we present a seq2seq learning approach for ASR transcription error correction of clinical dialogues. We introduce a new Gastrointestinal Clinical Dialogue (GCD) Dataset which was gathered by healthcare professionals from a NHS Inflammatory Bowel Disease clinic and use this in a comparative study with four commercial ASR systems. Using self-supervision strategies, we fine-tune a seq2seq model on a mask-filling task using a domain-specific PubMed dataset which we have shared publicly for future research. The BART model fine-tuned for mask-filling was able to correct transcription errors and achieve lower word error rates for three out of four commercial ASR outputs.