# Hierarchical Transformer Model for Scientific Named Entity Recognition

arXiv: https://arxiv.org/abs/2203.14710 · HTML: https://mlsanity.com/paper/2203.14710/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 15 of its 20 references that are in the map.
- First posted on arXiv 28 Mar 2022.

## Builds on (most cited first, 15 of 15)

- [Attention Is All You Need](https://mlsanity.com/paper/1706.03762/) (2017)
- [BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding](https://mlsanity.com/paper/1810.04805/) (2018)
- [RoBERTa: A Robustly Optimized BERT Pretraining Approach](https://mlsanity.com/paper/1907.11692/) (2019)
- [Momentum Contrast for Unsupervised Visual Representation Learning](https://mlsanity.com/paper/1911.05722/) (2019)
- [BioBERT: a pre-trained biomedical language representation model for biomedical text mining](https://mlsanity.com/paper/1901.08746/) (2019)
- [SciBERT: A Pretrained Language Model for Scientific Text](https://mlsanity.com/paper/1903.10676/) (2019)
- [Neural Architectures for Named Entity Recognition](https://mlsanity.com/paper/1603.01360/) (2016)
- [Bidirectional LSTM-CRF Models for Sequence Tagging](https://mlsanity.com/paper/1508.01991/) (2015)
- [Mean teachers are better role models: Weight-averaged consistency targets improve semi-supervised deep learning results](https://mlsanity.com/paper/1703.01780/) (2017)
- [Multi-Task Identification of Entities, Relations, and Coreference for Scientific Knowledge Graph Construction](https://mlsanity.com/paper/1808.09602/) (2018)
- [Entity, Relation, and Event Extraction with Contextualized Span Representations](https://mlsanity.com/paper/1909.03546/) (2019)
- [FinBERT: A Pretrained Language Model for Financial Communications](https://mlsanity.com/paper/2006.08097/) (2020)
- [Span-based Joint Entity and Relation Extraction with Transformer Pre-training](https://mlsanity.com/paper/1909.07755/) (2019)
- [A Frustratingly Easy Approach for Entity and Relation Extraction](https://mlsanity.com/paper/2010.12812/) (2020)
- [TDMSci: A Specialized Corpus for Scientific Literature Entity Tagging of Tasks Datasets and Metrics](https://mlsanity.com/paper/2101.10273/) (2021)

## Abstract (arXiv)

The task of Named Entity Recognition (NER) is an important component of many natural language processing systems, such as relation extraction and knowledge graph construction. In this work, we present a simple and effective approach for Named Entity Recognition. The main idea of our approach is to encode the input subword sequence with a pre-trained transformer such as BERT, and then, instead of directly classifying the word labels, another layer of transformer is added to the subword representation to better encode the word-level interaction. We evaluate our approach on three benchmark datasets for scientific NER, particularly in the computer science and biomedical domains. Experimental results show that our model outperforms the current state-of-the-art on SciERC and TDM datasets without requiring external resources or specific data augmentation. Code is available at urlhttps://github.com/urchade/HNER.