# COVID-Rate: An Automated Framework for Segmentation of COVID-19 Lesions from Chest CT Scans

arXiv: https://arxiv.org/abs/2107.01527 · HTML: https://mlsanity.com/paper/2107.01527/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 14 of its 46 references that are in the map.
- First posted on arXiv 4 Jul 2021.

## Builds on (most cited first, 14 of 14)

- [Deep Residual Learning for Image Recognition](https://mlsanity.com/paper/1512.03385/) (2015)
- [U-Net: Convolutional Networks for Biomedical Image Segmentation](https://mlsanity.com/paper/1505.04597/) (2015)
- [DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFs](https://mlsanity.com/paper/1606.00915/) (2016)
- [Tversky loss function for image segmentation using 3D fully convolutional deep networks](https://mlsanity.com/paper/1706.05721/) (2017)
- [Inf-Net: Automatic COVID-19 Lung Infection Segmentation from CT Images](https://mlsanity.com/paper/2004.14133/) (2020)
- [A Novel Focal Tversky loss function with improved Attention U-Net for lesion segmentation](https://mlsanity.com/paper/1810.07842/) (2018)
- [CoroNet: A deep neural network for detection and diagnosis of COVID-19 from chest x-ray images](https://mlsanity.com/paper/2004.04931/) (2020)
- [CovidGAN: Data Augmentation Using Auxiliary Classifier GAN for Improved Covid-19 Detection](https://mlsanity.com/paper/2103.05094/) (2021)
- [Label-Free Segmentation of COVID-19 Lesions in Lung CT](https://mlsanity.com/paper/2009.06456/) (2020)
- [COVID-CAPS: A Capsule Network-based Framework for Identification of COVID-19 cases from X-ray Images](https://mlsanity.com/paper/2004.02696/) (2020)
- [Weakly Supervised Deep Learning for COVID-19 Infection Detection and Classification from CT Images](https://mlsanity.com/paper/2004.06689/) (2020)
- [A Weakly Supervised Consistency-based Learning Method for COVID-19 Segmentation in CT Images](https://mlsanity.com/paper/2007.02180/) (2020)
- [GASNet: Weakly-supervised Framework for COVID-19 Lesion Segmentation](https://mlsanity.com/paper/2010.09456/) (2020)
- [Diagnosis/Prognosis of COVID-19 Images: Challenges, Opportunities, and Applications](https://mlsanity.com/paper/2012.14106/) (2020)

## Abstract (arXiv)

Novel Coronavirus disease (COVID-19) is a highly contagious respiratory infection that has had devastating effects on the world. Recently, new COVID-19 variants are emerging making the situation more challenging and threatening. Evaluation and quantification of COVID-19 lung abnormalities based on chest Computed Tomography (CT) scans can help determining the disease stage, efficiently allocating limited healthcare resources, and making informed treatment decisions. During pandemic era, however, visual assessment and quantification of COVID-19 lung lesions by expert radiologists become expensive and prone to error, which raises an urgent quest to develop practical autonomous solutions. In this context, first, the paper introduces an open access COVID-19 CT segmentation dataset containing 433 CT images from 82 patients that have been annotated by an expert radiologist. Second, a Deep Neural Network (DNN)-based framework is proposed, referred to as the COVID-Rate, that autonomously segments lung abnormalities associated with COVID-19 from chest CT scans. Performance of the proposed COVID-Rate framework is evaluated through several experiments based on the introduced and external datasets. The results show a dice score of 0:802 and specificity and sensitivity of 0:997 and 0:832, respectively. Furthermore, the results indicate that the COVID-Rate model can efficiently segment COVID-19 lesions in both 2D CT images and whole lung volumes. Results on the external dataset illustrate generalization capabilities of the COVID-Rate model to CT images obtained from a different scanner.