# A State-of-the-art Survey of Object Detection Techniques in Microorganism Image Analysis: From Classical Methods to Deep Learning Approaches

arXiv: https://arxiv.org/abs/2105.03148 · HTML: https://mlsanity.com/paper/2105.03148/

## Key facts

- Cited by 12 papers in the map (data through 14 Oct 2026).
- Builds on 51 of its 246 references that are in the map.
- First posted on arXiv 7 May 2021.

## Builds on (most cited first, 30 of 51)

- [Deep Residual Learning for Image Recognition](https://mlsanity.com/paper/1512.03385/) (2015)
- [BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding](https://mlsanity.com/paper/1810.04805/) (2018)
- [Very Deep Convolutional Networks for Large-Scale Image Recognition](https://mlsanity.com/paper/1409.1556/) (2014)
- [Swin Transformer: Hierarchical Vision Transformer using Shifted Windows](https://mlsanity.com/paper/2103.14030/) (2021)
- [Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks](https://mlsanity.com/paper/1506.01497/) (2015)
- [End-to-End Object Detection with Transformers](https://mlsanity.com/paper/2005.12872/) (2020)
- [Mask R-CNN](https://mlsanity.com/paper/1703.06870/) (2017)
- [Feature Pyramid Networks for Object Detection](https://mlsanity.com/paper/1612.03144/) (2016)
- [You Only Look Once: Unified, Real-Time Object Detection](https://mlsanity.com/paper/1506.02640/) (2015)
- [Squeeze-and-Excitation Networks](https://mlsanity.com/paper/1709.01507/) (2017)
- [Going Deeper with Convolutions](https://mlsanity.com/paper/1409.4842/) (2014)
- [Deformable DETR: Deformable Transformers for End-to-End Object Detection](https://mlsanity.com/paper/2010.04159/) (2020)
- [SSD: Single Shot MultiBox Detector](https://mlsanity.com/paper/1512.02325/) (2015)
- [Fast R-CNN](https://mlsanity.com/paper/1504.08083/) (2015)
- [CBAM: Convolutional Block Attention Module](https://mlsanity.com/paper/1807.06521/) (2018)
- [Rich feature hierarchies for accurate object detection and semantic segmentation](https://mlsanity.com/paper/1311.2524/) (2013)
- [YOLOv4: Optimal Speed and Accuracy of Object Detection](https://mlsanity.com/paper/2004.10934/) (2020)
- [TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation](https://mlsanity.com/paper/2102.04306/) (2021)
- [YOLO9000: Better, Faster, Stronger](https://mlsanity.com/paper/1612.08242/) (2016)
- [Spatial Transformer Networks](https://mlsanity.com/paper/1506.02025/) (2015)
- [CrossViT: Cross-Attention Multi-Scale Vision Transformer for Image Classification](https://mlsanity.com/paper/2103.14899/) (2021)
- [Spatial Pyramid Pooling in Deep Convolutional Networks for Visual Recognition](https://mlsanity.com/paper/1406.4729/) (2014)
- [Training Region-based Object Detectors with Online Hard Example Mining](https://mlsanity.com/paper/1604.03540/) (2016)
- [Object Detection in 20 Years: A Survey](https://mlsanity.com/paper/1905.05055/) (2019)
- [R-FCN: Object Detection via Region-based Fully Convolutional Networks](https://mlsanity.com/paper/1605.06409/) (2016)
- [OverFeat: Integrated Recognition, Localization and Detection using Convolutional Networks](https://mlsanity.com/paper/1312.6229/) (2013)
- [DetectoRS: Detecting Objects with Recursive Feature Pyramid and Switchable Atrous Convolution](https://mlsanity.com/paper/2006.02334/) (2020)
- [3D Object Detection with Pointformer](https://mlsanity.com/paper/2012.11409/) (2020)
- [Spatial As Deep: Spatial CNN for Traffic Scene Understanding](https://mlsanity.com/paper/1712.06080/) (2017)
- [Rethinking Transformer-based Set Prediction for Object Detection](https://mlsanity.com/paper/2011.10881/) (2020)

## Built on by (most cited first, 12 of 12)

- [EBHI-Seg: A Novel Enteroscope Biopsy Histopathological Haematoxylin and Eosin Image Dataset for Image Segmentation Tasks](https://mlsanity.com/paper/2212.00532/) (2022)
- [EBHI:A New Enteroscope Biopsy Histopathological H&E Image Dataset for Image Classification Evaluation](https://mlsanity.com/paper/2202.08552/) (2022)
- [EMDS-7: Environmental Microorganism Image Dataset Seventh Version for Multiple Object Detection Evaluation](https://mlsanity.com/paper/2110.07723/) (2021)
- [A Comparative Study of Gastric Histopathology Sub-size Image Classification: from Linear Regression to Visual Transformer](https://mlsanity.com/paper/2205.12843/) (2022)
- [AATCT-IDS: A Benchmark Abdominal Adipose Tissue CT Image Dataset for Image Denoising, Semantic Segmentation, and Radiomics Evaluation](https://mlsanity.com/paper/2308.08172/) (2023)
- [PHE-SICH-CT-IDS: A Benchmark CT Image Dataset for Evaluation Semantic Segmentation, Object Detection and Radiomic Feature Extraction of Perihematomal Edema in Spontaneous Intracerebral Hemorrhage](https://mlsanity.com/paper/2308.10521/) (2023)
- [An application of Pixel Interval Down-sampling (PID) for dense tiny microorganism counting on environmental microorganism images](https://mlsanity.com/paper/2204.01341/) (2022)
- [ECPC-IDS:A benchmark endometrail cancer PET/CT image dataset for evaluation of semantic segmentation and detection of hypermetabolic regions](https://mlsanity.com/paper/2308.08313/) (2023)
- [FlightScope: An Experimental Comparative Review of Aircraft Detection Algorithms in Satellite Imagery](https://mlsanity.com/paper/2404.02877/) (2024)
- [A State-of-the-art Survey of U-Net in Microscopic Image Analysis: from Simple Usage to Structure Mortification](https://mlsanity.com/paper/2202.06465/) (2022)
- [High-Performance Fine Defect Detection in Artificial Leather Using Dual Feature Pool Object Detection](https://mlsanity.com/paper/2307.16751/) (2023)
- [Deep Learning-based Detection of Bacterial Swarm Motion Using a Single Image](https://mlsanity.com/paper/2410.15229/) (2024)

## Abstract (arXiv)

Microorganisms play a vital role in human life. Therefore, microorganism detection is of great significance to human beings. However, the traditional manual microscopic detection methods have the disadvantages of long detection cycle, low detection accuracy in large orders, and great difficulty in detecting uncommon microorganisms. Therefore, it is meaningful to apply computer image analysis technology to the field of microorganism detection. Computer image analysis can realize high-precision and high-efficiency detection of microorganisms. In this review, first,we analyse the existing microorganism detection methods in chronological order, from traditional image processing and traditional machine learning to deep learning methods. Then, we analyze and summarize these existing methods and introduce some potential methods, including visual transformers. In the end, the future development direction and challenges of microorganism detection are discussed. In general, we have summarized 142 related technical papers from 1985 to the present. This review will help researchers have a more comprehensive understanding of the development process, research status, and future trends in the field of microorganism detection and provide a reference for researchers in other fields.