# HydroNet: Benchmark Tasks for Preserving Intermolecular Interactions and Structural Motifs in Predictive and Generative Models for Molecular Data

arXiv: https://arxiv.org/abs/2012.00131 · HTML: https://mlsanity.com/paper/2012.00131/

## Key facts

- Cited by 3 papers in the map (data through 14 Oct 2026).
- First posted on arXiv 30 Nov 2020.

## Built on by (most cited first, 3 of 3)

- [Extreme Acceleration of Graph Neural Network-based Prediction Models for Quantum Chemistry](https://mlsanity.com/paper/2211.13853/) (2022)
- [Reducing Down(stream)time: Pretraining Molecular GNNs using Heterogeneous AI Accelerators](https://mlsanity.com/paper/2211.04598/) (2022)
- [Cloud Services Enable Efficient AI-Guided Simulation Workflows across Heterogeneous Resources](https://mlsanity.com/paper/2303.08803/) (2023)

## Abstract (arXiv)

Intermolecular and long-range interactions are central to phenomena as diverse as gene regulation, topological states of quantum materials, electrolyte transport in batteries, and the universal solvation properties of water. We present a set of challenge problems for preserving intermolecular interactions and structural motifs in machine-learning approaches to chemical problems, through the use of a recently published dataset of 4.95 million water clusters held together by hydrogen bonding interactions and resulting in longer range structural patterns. The dataset provides spatial coordinates as well as two types of graph representations, to accommodate a variety of machine-learning practices.
