{"total":55,"rows":[{"id":"2209.00796","title":"Diffusion Models: A Comprehensive Survey of Methods and Applications","created":"2022-09-02","cited_by_count":1114,"area":"diffusion"},{"id":"2210.13695","title":"Structure-based Drug Design with Equivariant Diffusion Models","created":"2022-10-24","cited_by_count":217,"area":"diffusion"},{"id":"2305.01140","title":"Geometric Latent Diffusion Models for 3D Molecule Generation","created":"2023-05-02","cited_by_count":186,"area":"diffusion"},{"id":"2403.07902","title":"DecompDiff: Diffusion Models with Decomposed Priors for Structure-Based Drug Design","created":"2024-02-26","cited_by_count":88,"area":"diffusion"},{"id":"2312.07168","title":"Equivariant Flow Matching with Hybrid Probability Transport","created":"2023-12-12","cited_by_count":60,"area":"diffusion"},{"id":"2404.19739","title":"Mixed Continuous and Categorical Flow Matching for 3D De Novo Molecule Generation","created":"2024-04-30","cited_by_count":54,"area":"diffusion"},{"id":"2309.17296","title":"Navigating the Design Space of Equivariant Diffusion-Based Generative Models for De Novo 3D Molecule Generation","created":"2023-09-29","cited_by_count":50,"area":"diffusion"},{"id":"2302.04313","title":"Geometry-Complete Diffusion for 3D Molecule Generation and Optimization","created":"2023-02-08","cited_by_count":37,"area":"diffusion"},{"id":"2305.12347","title":"Learning Joint 2D & 3D Diffusion Models for Complete Molecule Generation","created":"2023-05-21","cited_by_count":27,"area":"diffusion"},{"id":"2403.13829","title":"DecompOpt: Controllable and Decomposed Diffusion Models for Structure-based Molecular Optimization","created":"2024-03-07","cited_by_count":27,"area":"diffusion"},{"id":"2406.08511","title":"Diffusion Models in $\\textit{De Novo}$ Drug Design","created":"2024-06-07","cited_by_count":26,"area":"diffusion"},{"id":"2407.01648","title":"Aligning Target-Aware Molecule Diffusion Models with Exact Energy Optimization","created":"2024-07-01","cited_by_count":25,"area":"diffusion"},{"id":"2305.13266","title":"Coarse-to-Fine: a Hierarchical Diffusion Model for Molecule Generation in 3D","created":"2023-05-05","cited_by_count":24,"area":"diffusion"},{"id":"2508.12629","title":"FlowMol3: Flow Matching for 3D De Novo Small-Molecule Generation","created":"2025-08-18","cited_by_count":21,"area":"diffusion"},{"id":"2405.03961","title":"Structure-based drug design by denoising voxel grids","created":"2024-05-07","cited_by_count":19,"area":"diffusion"},{"id":"2403.15441","title":"Unified Generative Modeling of 3D Molecules via Bayesian Flow Networks","created":"2024-03-17","cited_by_count":18,"area":"diffusion"},{"id":"2508.17815","title":"Multi-domain Distribution Learning for De Novo Drug Design","created":"2025-08-25","cited_by_count":15,"area":"diffusion"},{"id":"2507.17731","title":"Flow Matching Meets Biology and Life Science: A Survey","created":"2025-07-23","cited_by_count":14,"area":"diffusion"},{"id":"2402.18583","title":"Binding-Adaptive Diffusion Models for Structure-Based Drug Design","created":"2024-01-15","cited_by_count":12,"area":"diffusion"},{"id":"2410.20688","title":"Reprogramming Pretrained Target-Specific Diffusion Models for Dual-Target Drug Design","created":"2024-10-28","cited_by_count":11,"area":"diffusion"},{"id":"2411.16644","title":"Exploring Discrete Flow Matching for 3D De Novo Molecule Generation","created":"2024-11-25","cited_by_count":11,"area":"diffusion"},{"id":"2301.09642","title":"DiffSDS: A language diffusion model for protein backbone inpainting under geometric conditions and constraints","created":"2023-01-22","cited_by_count":10,"area":"diffusion"},{"id":"2502.06027","title":"Generating 3D Binding Molecules Using Shape-Conditioned Diffusion Models with Guidance","created":"2025-02-09","cited_by_count":10,"area":"diffusion"},{"id":"2501.02526","title":"Unified Guidance for Geometry-Conditioned Molecular Generation","created":"2025-01-05","cited_by_count":9,"area":"diffusion"},{"id":"2401.05370","title":"Autoregressive fragment-based diffusion for pocket-aware ligand design","created":"2023-12-15","cited_by_count":7,"area":"diffusion"},{"id":"2407.13981","title":"Decomposed Direct Preference Optimization for Structure-Based Drug Design","created":"2024-07-19","cited_by_count":7,"area":"diffusion"},{"id":"2504.08051","title":"Compositional Flows for 3D Molecule and Synthesis Pathway Co-design","created":"2025-04-10","cited_by_count":6,"area":"diffusion"},{"id":"2406.16821","title":"General Binding Affinity Guidance for Diffusion Models in Structure-Based Drug Design","created":"2024-06-24","cited_by_count":5,"area":"diffusion"},{"id":"2501.14216","title":"TFG-Flow: Training-free Guidance in Multimodal Generative Flow","created":"2025-01-24","cited_by_count":5,"area":"diffusion"},{"id":"2410.20660","title":"TurboHopp: Accelerated Molecule Scaffold Hopping with Consistency Models","created":"2024-10-28","cited_by_count":3,"area":"diffusion"},{"id":"2412.01174","title":"Rectified Flow For Structure Based Drug Design","created":"2024-12-02","cited_by_count":3,"area":"diffusion"},{"id":"2512.05844","title":"NEAT: Neighborhood-Guided, Efficient, Autoregressive Set Transformer for 3D Molecular Generation","created":"2025-12-05","cited_by_count":3,"area":"diffusion"},{"id":"2401.15617","title":"Diffusion-based Graph Generative Methods","created":"2024-01-28","cited_by_count":2,"area":"diffusion"},{"id":"2404.02003","title":"AUTODIFF: Autoregressive Diffusion Modeling for Structure-based Drug Design","created":"2024-04-02","cited_by_count":2,"area":"diffusion"},{"id":"2410.09240","title":"nach0-pc: Multi-task Language Model with Molecular Point Cloud Encoder","created":"2024-10-11","cited_by_count":2,"area":"diffusion"},{"id":"2511.17249","title":"FlexiFlow: decomposable flow matching for generation of flexible molecular ensemble","created":"2025-11-21","cited_by_count":2,"area":"diffusion"},{"id":"2604.11483","title":"CAGenMol: Condition-Aware Diffusion Language Model for Goal-Directed Molecular Generation","created":"2026-04-13","cited_by_count":2,"area":"diffusion"},{"id":"2411.05472","title":"Bridging the Gap between Learning and Inference for Diffusion-Based Molecule Generation","created":"2024-11-08","cited_by_count":1,"area":"diffusion"},{"id":"2507.02085","title":"GeoAda: Efficiently Finetune Geometric Diffusion Models with Equivariant Adapters","created":"2025-07-02","cited_by_count":1,"area":"diffusion"},{"id":"2508.06364","title":"ActivityDiff: A diffusion model with Positive and Negative Activity Guidance for De Novo Drug Design","created":"2025-08-08","cited_by_count":1,"area":"diffusion"},{"id":"2512.10991","title":"MolSculpt: Sculpting 3D Molecular Geometries from Chemical Syntax","created":"2025-12-09","cited_by_count":1,"area":"diffusion"},{"id":"2605.25681","title":"Don't Retrain, Just Reuse: Recovering Dual-Target Molecules from Single-Target Diffusion Models","created":"2026-05-25","cited_by_count":1,"area":"diffusion"},{"id":"2607.12349","title":"Generating Developable 3D Molecules via Pocket-Conditioned Diffusion and Property-Aware Optimization","created":"2026-07-14","cited_by_count":1,"area":"diffusion"},{"id":"2406.18330","title":"Molecular Diffusion Models with Virtual Receptors","created":"2024-06-26","cited_by_count":0,"area":"diffusion"},{"id":"2503.20913","title":"TransDiffSBDD: Causality-Aware Multi-Modal Structure-Based Drug Design","created":"2025-03-26","cited_by_count":0,"area":"diffusion"},{"id":"2504.21065","title":"A 3D pocket-aware and affinity-guided diffusion model for lead optimization","created":"2025-04-29","cited_by_count":0,"area":"diffusion"},{"id":"2507.18603","title":"Demystify Protein Generation with Hierarchical Conditional Diffusion Models","created":"2025-07-24","cited_by_count":0,"area":"diffusion"},{"id":"2509.25198","title":"SOLD: SELFIES-based Objective-driven Latent Diffusion","created":"2025-09-03","cited_by_count":0,"area":"diffusion"},{"id":"2511.00209","title":"Diffusion Models at the Drug Discovery Frontier: A Review on Generating Small Molecules versus Therapeutic Peptides","created":"2025-10-31","cited_by_count":0,"area":"diffusion"},{"id":"2511.04984","title":"Peptide2Mol: A Diffusion Model for Generating Small Molecules as Peptide Mimics for Targeted Protein Binding","created":"2025-11-07","cited_by_count":0,"area":"diffusion"},{"id":"2605.17693","title":"Fine-tuning Pocket-Aware Diffusion Models via Denoising Policy Optimization","created":"2026-05-17","cited_by_count":0,"area":"diffusion"},{"id":"2606.01220","title":"Fine-Tuning Diffusion Models for Molecular Generation via Reinforcement Learning and Fast Sampling","created":"2026-05-31","cited_by_count":0,"area":"diffusion"},{"id":"2607.01105","title":"SynLaD: Latent Diffusion for Generating Synthesizable Molecules Conditioned on 3D Pharmacophore Profiles","created":"2026-07-01","cited_by_count":0,"area":"diffusion"},{"id":"2607.18144","title":"Do Language Models Dream of Binding Molecules? Benchmarking LLMs under Spatial Constraints","created":"2026-07-20","cited_by_count":0,"area":"diffusion"},{"id":"2608.31009","title":"Language-Informed Flow Matching for Trend-Guided Structure-Based 3D Molecular Generation","created":"2026-08-31","cited_by_count":0,"area":"diffusion"}],"next_cursor":null}