{"total":173,"rows":[{"id":"2206.01653","title":"Metrics reloaded: Recommendations for image analysis validation","created":"2022-06-03","cited_by_count":195,"area":null},{"id":"2405.12971","title":"BiomedParse: a biomedical foundation model for image parsing of everything everywhere all at once","created":"2024-05-21","cited_by_count":111,"area":null},{"id":"2306.15350","title":"CellViT: Vision Transformers for Precise Cell Segmentation and Classification","created":"2023-06-27","cited_by_count":108,"area":null},{"id":"2302.01790","title":"Understanding metric-related pitfalls in image analysis validation","created":"2023-02-03","cited_by_count":58,"area":null},{"id":"2308.05864","title":"The Multi-modality Cell Segmentation Challenge: Towards Universal Solutions","created":"2023-08-10","cited_by_count":39,"area":null},{"id":"2303.06274","title":"CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting","created":"2023-03-11","cited_by_count":33,"area":null},{"id":"2102.06867","title":"CPP-Net: Context-aware Polygon Proposal Network for Nucleus Segmentation","created":"2021-02-13","cited_by_count":32,"area":null},{"id":"2203.02284","title":"Nuclei instance segmentation and classification in histopathology images with StarDist","created":"2022-03-03","cited_by_count":31,"area":null},{"id":"2105.02184","title":"PolarMask++: Enhanced Polar Representation for Single-Shot Instance Segmentation and Beyond","created":"2021-05-05","cited_by_count":27,"area":null},{"id":"2401.13220","title":"Segment Any Cell: A SAM-based Auto-prompting Fine-tuning Framework for Nuclei Segmentation","created":"2024-01-24","cited_by_count":24,"area":null},{"id":"2103.00429","title":"Medical Image Segmentation with Limited Supervision: A Review of Deep Network Models","created":"2021-02-28","cited_by_count":22,"area":null},{"id":"2311.15939","title":"Unleashing the Power of Prompt-driven Nucleus Instance Segmentation","created":"2023-11-27","cited_by_count":19,"area":null},{"id":"2202.08195","title":"Nuclei Segmentation with Point Annotations from Pathology Images via Self-Supervised Learning and Co-Training","created":"2022-02-16","cited_by_count":16,"area":null},{"id":"2307.07044","title":"AnyStar: Domain randomized universal star-convex 3D instance segmentation","created":"2023-07-13","cited_by_count":15,"area":null},{"id":"2302.11416","title":"Structure Embedded Nucleus Classification for Histopathology Images","created":"2023-02-22","cited_by_count":14,"area":null},{"id":"2405.15700","title":"Trackastra: Transformer-based cell tracking for live-cell microscopy","created":"2024-05-24","cited_by_count":14,"area":null},{"id":"2104.03393","title":"Contour Proposal Networks for Biomedical Instance Segmentation","created":"2021-04-07","cited_by_count":13,"area":null},{"id":"2403.02611","title":"A Unified Framework for Microscopy Defocus Deblur with Multi-Pyramid Transformer and Contrastive Learning","created":"2024-03-05","cited_by_count":13,"area":null},{"id":"2212.14121","title":"CellTranspose: Few-shot Domain Adaptation for Cellular Instance Segmentation","created":"2022-12-28","cited_by_count":11,"area":null},{"id":"2103.14572","title":"Sparse Object-level Supervision for Instance Segmentation with Pixel Embeddings","created":"2021-03-26","cited_by_count":10,"area":null},{"id":"2212.03465","title":"MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy","created":"2022-12-07","cited_by_count":10,"area":null},{"id":"2106.15918","title":"Positive-unlabeled Learning for Cell Detection in Histopathology Images with Incomplete Annotations","created":"2021-06-30","cited_by_count":9,"area":null},{"id":"2408.15954","title":"InstanSeg: an embedding-based instance segmentation algorithm optimized for accurate, efficient and portable cell segmentation","created":"2024-08-28","cited_by_count":9,"area":null},{"id":"2101.05846","title":"How Shift Equivariance Impacts Metric Learning for Instance Segmentation","created":"2021-01-14","cited_by_count":7,"area":null},{"id":"2308.04526","title":"Large-Scale Multi-Hypotheses Cell Tracking Using Ultrametric Contours Maps","created":"2023-08-08","cited_by_count":7,"area":null},{"id":"2403.18501","title":"HEMIT: H&E to Multiplex-immunohistochemistry Image Translation with Dual-Branch Pix2pix Generator","created":"2024-03-27","cited_by_count":7,"area":null},{"id":"2401.09773","title":"SEINE: Structure Encoding and Interaction Network for Nuclei Instance Segmentation","created":"2024-01-18","cited_by_count":6,"area":null},{"id":"2404.18459","title":"Chameleon: A Data-Efficient Generalist for Dense Visual Prediction in the Wild","created":"2024-04-29","cited_by_count":6,"area":null},{"id":"2412.01410","title":"CellSeg1: Robust Cell Segmentation with One Training Image","created":"2024-12-02","cited_by_count":6,"area":null},{"id":"2102.11865","title":"Probabilistic Spatial Analysis in Quantitative Microscopy with Uncertainty-Aware Cell Detection using Deep Bayesian Regression of Density Maps","created":"2021-02-23","cited_by_count":5,"area":null},{"id":"2105.00794","title":"Robust 3D Cell Segmentation: Extending the View of Cellpose","created":"2021-05-03","cited_by_count":5,"area":null},{"id":"2202.03107","title":"Bubble identification from images with machine learning methods","created":"2022-02-07","cited_by_count":5,"area":null},{"id":"2203.11692","title":"Panoptic segmentation with highly imbalanced semantic labels","created":"2022-03-03","cited_by_count":5,"area":null},{"id":"2210.03551","title":"Instance Segmentation of Dense and Overlapping Objects via Layering","created":"2022-10-07","cited_by_count":5,"area":null},{"id":"2211.12872","title":"{\\mu}Split: efficient image decomposition for microscopy data","created":"2022-11-23","cited_by_count":5,"area":null},{"id":"2303.08434","title":"DeDA: Deep Directed Accumulator","created":"2023-03-15","cited_by_count":5,"area":null},{"id":"2407.08625","title":"Histopathological Image Classification with Cell Morphology Aware Deep Neural Networks","created":"2024-07-11","cited_by_count":5,"area":null},{"id":"2408.11787","title":"NuSegDG: Integration of Heterogeneous Space and Gaussian Kernel for Domain-Generalized Nuclei Segmentation","created":"2024-08-21","cited_by_count":5,"area":null},{"id":"2302.14762","title":"Kartezio: Evolutionary Design of Explainable Pipelines for Biomedical Image Analysis","created":"2023-02-28","cited_by_count":4,"area":null},{"id":"2407.09979","title":"PFPs: Prompt-guided Flexible Pathological Segmentation for Diverse Potential Outcomes Using Large Vision and Language Models","created":"2024-07-13","cited_by_count":4,"area":null},{"id":"2106.07159","title":"Object-Guided Instance Segmentation With Auxiliary Feature Refinement for Biological Images","created":"2021-06-14","cited_by_count":3,"area":null},{"id":"2202.13560","title":"ConvNeXt-backbone HoVerNet for nuclei segmentation and classification","created":"2022-02-28","cited_by_count":3,"area":null},{"id":"2208.06202","title":"Image Translation Based Nuclei Segmentation for Immunohistochemistry Images","created":"2022-08-12","cited_by_count":3,"area":null},{"id":"2208.12460","title":"Nuclei & Glands Instance Segmentation in Histology Images: A Narrative Review","created":"2022-08-26","cited_by_count":3,"area":null},{"id":"2304.07597","title":"An Instance Segmentation Dataset of Yeast Cells in Microstructures","created":"2023-04-15","cited_by_count":3,"area":null},{"id":"2304.10671","title":"Point-supervised Single-cell Segmentation via Collaborative Knowledge Sharing","created":"2023-04-20","cited_by_count":3,"area":null},{"id":"2308.03382","title":"Enhancing Nucleus Segmentation with HARU-Net: A Hybrid Attention Based Residual U-Blocks Network","created":"2023-08-07","cited_by_count":3,"area":null},{"id":"2310.08501","title":"Unsupervised Learning of Object-Centric Embeddings for Cell Instance Segmentation in Microscopy Images","created":"2023-10-12","cited_by_count":3,"area":null},{"id":"2312.07899","title":"Morphological Profiling for Drug Discovery in the Era of Deep Learning","created":"2023-12-13","cited_by_count":3,"area":null},{"id":"2407.18054","title":"LKCell: Efficient Cell Nuclei Instance Segmentation with Large Convolution Kernels","created":"2024-07-25","cited_by_count":3,"area":null},{"id":"2503.11439","title":"COIN: Confidence Score-Guided Distillation for Annotation-Free Cell Segmentation","created":"2025-03-14","cited_by_count":3,"area":null},{"id":"2506.09724","title":"The Four Color Theorem for Cell Instance Segmentation","created":"2025-06-11","cited_by_count":3,"area":null},{"id":"2510.09848","title":"Cell Instance Segmentation: The Devil Is in the Boundaries","created":"2025-10-10","cited_by_count":3,"area":null},{"id":"2204.03014","title":"EfficientCellSeg: Efficient Volumetric Cell Segmentation Using Context Aware Pseudocoloring","created":"2022-04-06","cited_by_count":2,"area":null},{"id":"2206.01309","title":"H-EMD: A Hierarchical Earth Mover's Distance Method for Instance Segmentation","created":"2022-06-02","cited_by_count":2,"area":null},{"id":"2209.02498","title":"MMV_Im2Im: An Open Source Microscopy Machine Vision Toolbox for Image-to-Image Transformation","created":"2022-09-06","cited_by_count":2,"area":null},{"id":"2304.13736","title":"Automated Whole Slide Imaging for Label-Free Histology using Photon Absorption Remote Sensing Microscopy","created":"2023-04-26","cited_by_count":2,"area":null},{"id":"2308.12116","title":"The TYC Dataset for Understanding Instance-Level Semantics and Motions of Cells in Microstructures","created":"2023-08-23","cited_by_count":2,"area":null},{"id":"2309.04888","title":"Semi-supervised Instance Segmentation with a Learned Shape Prior","created":"2023-09-09","cited_by_count":2,"area":null},{"id":"2310.14226","title":"Multi-stream Cell Segmentation with Low-level Cues for Multi-modality Images","created":"2023-10-22","cited_by_count":2,"area":null},{"id":"2311.08269","title":"Defining the boundaries: challenges and advances in identifying cells in microscopy images","created":"2023-11-14","cited_by_count":2,"area":null},{"id":"2406.01613","title":"QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis","created":"2024-05-31","cited_by_count":2,"area":null},{"id":"2406.09168","title":"SR-CACO-2: A Dataset for Confocal Fluorescence Microscopy Image Super-Resolution","created":"2024-06-13","cited_by_count":2,"area":null},{"id":"2409.18291","title":"Efficient Microscopic Image Instance Segmentation for Food Crystal Quality Control","created":"2024-09-26","cited_by_count":2,"area":null},{"id":"2504.12078","title":"Single-shot Star-convex Polygon-based Instance Segmentation for Spatially-correlated Biomedical Objects","created":"2025-04-16","cited_by_count":2,"area":null},{"id":"2505.05073","title":"RepSNet: A Nucleus Instance Segmentation model based on Boundary Regression and Structural Re-parameterization","created":"2025-05-08","cited_by_count":2,"area":null},{"id":"2508.16239","title":"EM3M: An Electron Micrograph Dataset for Microstructural Segmentation and Generation","created":"2025-08-22","cited_by_count":2,"area":null},{"id":"2509.00311","title":"MorphGen: Morphology-Guided Representation Learning for Robust Single-Domain Generalization in Histopathological Cancer Classification","created":"2025-08-30","cited_by_count":2,"area":null},{"id":"2602.05420","title":"Disco: Densely-overlapping Cell Instance Segmentation via Adjacency-aware Collaborative Coloring","created":"2026-02-05","cited_by_count":2,"area":null},{"id":"2603.00143","title":"GrapHist: Graph Self-Supervised Learning for Histopathology","created":"2026-02-24","cited_by_count":2,"area":null},{"id":"2603.07098","title":"NuNext: Reframing Nucleus Detection as Next-Point Detection","created":"2026-03-07","cited_by_count":2,"area":null},{"id":"2603.17845","title":"Revisiting foundation models for cell instance segmentation","created":"2026-03-18","cited_by_count":2,"area":null},{"id":"2604.12075","title":"OpenTME: An Open Dataset of AI-powered H&E Tumor Microenvironment Profiles from TCGA","created":"2026-04-13","cited_by_count":2,"area":null},{"id":"2101.10033","title":"Embedding-based Instance Segmentation in Microscopy","created":"2021-01-25","cited_by_count":1,"area":null},{"id":"2106.03382","title":"ContourRender: Detecting Arbitrary Contour Shape For Instance Segmentation In One Pass","created":"2021-06-07","cited_by_count":1,"area":null},{"id":"2107.04388","title":"Hoechst Is All You Need: Lymphocyte Classification with Deep Learning","created":"2021-07-09","cited_by_count":1,"area":null},{"id":"2110.13846","title":"A Light-weight Interpretable Compositional Model for Nuclei Detection and Weakly-Supervised Segmentation","created":"2021-10-26","cited_by_count":1,"area":null},{"id":"2111.08430","title":"Code-free development and deployment of deep segmentation models for digital pathology","created":"2021-11-16","cited_by_count":1,"area":null},{"id":"2204.04635","title":"ConsInstancy: Learning Instance Representations for Semi-Supervised Panoptic Segmentation of Concrete Aggregate Particles","created":"2022-04-10","cited_by_count":1,"area":null},{"id":"2208.00098","title":"Weakly Supervised Deep Instance Nuclei Detection using Points Annotation in 3D Cardiovascular Immunofluorescent Images","created":"2022-07-29","cited_by_count":1,"area":null},{"id":"2210.06909","title":"HoechstGAN: Virtual Lymphocyte Staining Using Generative Adversarial Networks","created":"2022-10-13","cited_by_count":1,"area":null},{"id":"2306.15784","title":"NCIS: Deep Color Gradient Maps Regression and Three-Class Pixel Classification for Enhanced Neuronal Cell Instance Segmentation in Nissl-Stained Histological Images","created":"2023-06-27","cited_by_count":1,"area":null},{"id":"2308.01769","title":"Focus on Content not Noise: Improving Image Generation for Nuclei Segmentation by Suppressing Steganography in CycleGAN","created":"2023-08-03","cited_by_count":1,"area":null},{"id":"2309.04190","title":"SegmentAnything helps microscopy images based automatic and quantitative organoid detection and analysis","created":"2023-09-08","cited_by_count":1,"area":null},{"id":"2309.10513","title":"Uncertainty Estimation in Instance Segmentation with Star-convex Shapes","created":"2023-09-19","cited_by_count":1,"area":null},{"id":"2310.03346","title":"Combining Datasets with Different Label Sets for Improved Nucleus Segmentation and Classification","created":"2023-10-05","cited_by_count":1,"area":null},{"id":"2310.04461","title":"AI-based automated active learning for discovery of hidden dynamic processes: A use case in light microscopy","created":"2023-10-05","cited_by_count":1,"area":null},{"id":"2310.04895","title":"Cell Tracking-by-detection using Elliptical Bounding Boxes","created":"2023-10-07","cited_by_count":1,"area":null},{"id":"2310.19641","title":"DistNet2D: Leveraging long-range temporal information for efficient segmentation and tracking","created":"2023-10-30","cited_by_count":1,"area":null},{"id":"2311.15113","title":"NCL-SM: A Fully Annotated Dataset of Images from Human Skeletal Muscle Biopsies","created":"2023-11-25","cited_by_count":1,"area":null},{"id":"2401.15638","title":"Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images","created":"2024-01-28","cited_by_count":1,"area":null},{"id":"2405.19746","title":"DenseSeg: Joint Learning for Semantic Segmentation and Landmark Detection Using Dense Image-to-Shape Representation","created":"2024-05-30","cited_by_count":1,"area":null},{"id":"2407.04920","title":"qlty: handling large tensors in scientific imaging","created":"2024-07-06","cited_by_count":1,"area":null},{"id":"2408.14810","title":"Generalist Segmentation Algorithm for Photoreceptors Analysis in Adaptive Optics Imaging","created":"2024-08-27","cited_by_count":1,"area":null},{"id":"2411.06583","title":"Enhancing frozen histological section images using permanent-section-guided deep learning with nuclei attention","created":"2024-11-10","cited_by_count":1,"area":null},{"id":"2502.00418","title":"Parameter Efficient Fine-Tuning of Segment Anything Model for Biomedical Imaging","created":"2025-02-01","cited_by_count":1,"area":null},{"id":"2503.08603","title":"CellStyle: Improved Zero-Shot Cell Segmentation via Style Transfer","created":"2025-03-11","cited_by_count":1,"area":null},{"id":"2505.06918","title":"Uni-AIMS: AI-Powered Microscopy Image Analysis","created":"2025-05-11","cited_by_count":1,"area":null},{"id":"2505.20746","title":"Unpaired Image-to-Image Translation for Segmentation and Signal Unmixing","created":"2025-05-27","cited_by_count":1,"area":null},{"id":"2508.11411","title":"SelfAdapt: Unsupervised Domain Adaptation of Cell Segmentation Models","created":"2025-08-15","cited_by_count":1,"area":null}],"next_cursor":"100"}